Measuring Rab interaction with a GTPase Assay – GTPases are in the limelight in biology and drug discovery because of their role in a wide range of cellular processes and functions. They are highly conserved regulatory proteins involved in such diverse roles as signal transduction, protein biosynthesis, cell adhesion, membrane remodeling and trafficking, cytoskeletal reorganization, apoptosis, autophagy, and cell motility, to mention a few. GTPases have such extensive function in cellular operation that they are called master regulators of intracellular membrane traffic.
Currently, more than 70 different types of Rab GTPases are known to exist. Rabs are similar to other GTPases as they all switch between two conformations, an inactive form bound to GDP, and an active form bound to GTP.
Bound GTPase-GDP (guanosine diphosphate) and active form with GTPase-GTP (guanosine triphosphate) – ‘molecular switch’
GTPases are fundamentally a large superfamily of enzymes that can bind and hydrolyze guanosine triphosphate at the g phosphate bond in the presence of Mg2+ through a molecular switch that has been widely characterized. The GTPase activity is a function of binding and hydrolysis of GTP and takes place in the highly conserved G domain of the protein, common to all GTPases. This simple chemical reaction – amenable to the determination of GTPase activity – is belied by the complicated functions of GTPases, and the vast interest of such enzymes. Included in the superfamily are both the GTP-binding proteins and the G proteins, the latter referring to the signal-transducing heterotrimers. GTP hydrolysis can then be measured by a GTPase assay.
Rab GTPases are Subset of the Famous Ras GTPase Family
In recent years, much has been learned about the disease associations with GTPase dysfunction. Rab GTPases are members of the Ras superfamily of G proteins. Mutant K-Ras proteins are significant drivers of human cancers and may play a direct role in about 1 million cancer cases per year. Ras GTPases are important targets in drug discovery and development, as genetic alterations in Ras GTPase are very common in human cancers. The Ras oncogene has been an elusive target for drug discovery, challenges in targeting Ras GTPases are reviewed, and similar difficulties face the targeting of Rab GTPases.
Rab GTPase dysfunction or mutation has not only been implicated in many types of cancers, but also in Parkinson’s, Alzheimer’s, and other neurological diseases. In recent years Rab5 has been added to the GTPases (like Ras) that have been implicated as a driver of malignancy and in other cancer-related processes.
Rab5 as a drug target is also being investigated from observations that autophagy plays a role in neurodegenerative diseases, including Alzheimers and Parkinsons. It isn’t yet clear exactly how Rab may be directly involved, but many investigators have shown that Drosophila (fruit fly) models of amyloid toxicity may be helpful to study the role of autophagy in neurodegeneration, including Alzheimer’s. Recently, Dr. Chengbiao Wu and co-workers published an article in Traffic that discusses how Rab5 may play a critical role in mediating the dysregulation of several systems in Alzheimer’s disease. Rab5 mediated endocytic pathways are being studied to determine their role in neurodegeneration. The overarching goal is to validate Rab5 as a drug target and discover new therapeutics for neurodegenerative diseases.
Transcreener® GTPase Assay to Help Study Rabs
Other simple organisms can also serve as models for more complex creatures, as the GTPases are conserved and widely expressed. Hoepflinger and co-workers first detailed study of a conventional Rab5 GTPase in green algae using the Transcreener assay. These scientists confirmed their unidentified proteins – wild type and mutants – are indeed Rab5 GTPases. The authors used the activity assay with only 10 uM GTP and various amounts of their purified recombinant protein in 96 well plates. The fluorescent signal was measured and then converted using a standard curve. This robust assay is more sensitive than other colorimetric assays for GTPases, and is the only ‘mix and read’ fluorescent assay on the market.
Their study illustrates the broad applicability of the Transcreener GTPase Assay not only in drug discovery but in biological studies that deepen our understanding of the wide variety of functions of GTPases. Sequence alignment algorithms may be used to form hypotheses that proteins are similar, and the actual assay confirms the enzymatic activity.
A more recent study by Binda et al. at the Universite de Sherbrooke used the Transcreener GDP GTPase Assay to study the GTPase Rab4. The group was interested in how GPCRs interact with Rab proteins. Specifically, they wanted to determine if increasing concentrations of L-PGDS would lead to GDP released by Rab4. The results indicated that L-PGDS does activate Rab4 but determined that future experiments would be necessary to uncover the mechanism involved.
Finding better inhibitors in the future will be paramount in finding treatments for disease. HTS compatible assays like Transcreener will continue to provide a useful tool at solving the dilemma. Rab GTPase family is surely not far behind the Ras GTPases in target validation and drug discovery.
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 Xu W, Fang F, Ding J, Wu C, ‘Dysregulation of Rab5-Mediated Endocytic Pathways in Alzheimers Disease’ in press, 2019 Traffic.
Hoepflinger MC, Geretschlaeger A, Sommer A, Hoeftberger M, Hametner C, Ueda T, and Foissner I. ‘Molecular Analysis and Localization of CaARA7, a Conventional RAB5 GTPase from Characean Algae’ Traffic 2015 doi:10.1111/tra.12267
 Binda C, Genier S, Degrandmaison J, Picard S, Frechette L, Jean S, Marsault E, Parent J. L-type prostaglandin D synthase regulates the trafficking of the PGD2 DP1 receptor by interacting with the GTPase Rab 4. 2019 JBC Papers in Press http://www.jbc.org/content/early/2019/10/01/jbc.RA119.008233